IL_9QQP_103

3D structure

PDB id

9QQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome rotated-2 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

9QQP|1|A2|A|3319, 9QQP|1|A2|U|3335, 9QQP|1|A2|C|3339

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQP|1|A2|C|3316
9QQP|1|A2|G|3317
9QQP|1|A2|A|3318
9QQP|1|A2|A|3319
9QQP|1|A2|G|3320
9QQP|1|A2|G|3321
*
9QQP|1|A2|U|3333
9QQP|1|A2|G|3334
9QQP|1|A2|U|3335
9QQP|1|A2|U|3336
9QQP|1|A2|G|3337
9QQP|1|A2|A|3338
9QQP|1|A2|C|3339
9QQP|1|A2|G|3340

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain D2

Large ribosomal subunit protein uL2

Chain j2

Large ribosomal subunit protein eL43

Chain m2

Small subunit ribosomal RNA; SSU rRNA