IL_9QQP_109

3D structure

PDB id

9QQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome rotated-2 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

C(5MC)AA(A2M)UGCCUC(OMG)*(OMC)GCG

Length

16 nucleotides

Bulged bases

9QQP|1|A2|A2M|3441, 9QQP|1|A2|C|3447, 9QQP|1|A2|C|3466

QA status

Modified nucleotides: 5MC, A2M, OMG, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQP|1|A2|C|3437
9QQP|1|A2|5MC|3438
9QQP|1|A2|A|3439
9QQP|1|A2|A|3440
9QQP|1|A2|A2M|3441
9QQP|1|A2|U|3442
9QQP|1|A2|G|3443
9QQP|1|A2|C|3444
9QQP|1|A2|C|3445
9QQP|1|A2|U|3446
9QQP|1|A2|C|3447
9QQP|1|A2|OMG|3448
*
9QQP|1|A2|OMC|3464
9QQP|1|A2|G|3465
9QQP|1|A2|C|3466
9QQP|1|A2|G|3467

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain h2

60S ribosomal protein L41

Chain m2

Small subunit ribosomal RNA; SSU rRNA