IL_9QQP_147

3D structure

PDB id

9QQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome rotated-2 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCCCGGAUAG*UGCGGAGAG

Length

19 nucleotides

Bulged bases

9QQP|1|A2|C|4409, 9QQP|1|A2|C|4410, 9QQP|1|A2|A|4416, 9QQP|1|A2|G|4515, 9QQP|1|A2|C|4516, 9QQP|1|A2|G|4518, 9QQP|1|A2|A|4521

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQP|1|A2|C|4408
9QQP|1|A2|C|4409
9QQP|1|A2|C|4410
9QQP|1|A2|C|4411
9QQP|1|A2|G|4412
9QQP|1|A2|G|4413
9QQP|1|A2|A|4414
9QQP|1|A2|U|4415
9QQP|1|A2|A|4416
9QQP|1|A2|G|4417
*
9QQP|1|A2|U|4514
9QQP|1|A2|G|4515
9QQP|1|A2|C|4516
9QQP|1|A2|G|4517
9QQP|1|A2|G|4518
9QQP|1|A2|A|4519
9QQP|1|A2|G|4520
9QQP|1|A2|A|4521
9QQP|1|A2|G|4522

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain C1

Large ribosomal subunit protein uL6

Chain G1

Large ribosomal subunit protein eL14

Chain H2

Large ribosomal subunit protein eL6

Chain I2

Large ribosomal subunit protein uL13

Chain M2

Large ribosomal subunit protein eL20