IL_9QQP_177

3D structure

PDB id

9QQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome rotated-2 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUUAU*ACGU(OMC)

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQP|1|m2|G|108
9QQP|1|m2|U|109
9QQP|1|m2|U|110
9QQP|1|m2|A|111
9QQP|1|m2|U|112
*
9QQP|1|m2|A|351
9QQP|1|m2|C|352
9QQP|1|m2|G|353
9QQP|1|m2|U|354
9QQP|1|m2|OMC|355

Current chains

Chain m2

18S ribosomal RNA

Nearby chains

Chain r2

40S ribosomal protein S4, X isoform (eS4)

Chain u2

Small ribosomal subunit protein eS8

Chain w2

Small ribosomal subunit protein uS17