IL_9QQP_184

3D structure

PDB id

9QQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome rotated-2 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAGUG*CUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQP|1|m2|C|225
9QQP|1|m2|A|226
9QQP|1|m2|G|227
9QQP|1|m2|U|289
9QQP|1|m2|G|290
*
9QQP|1|m2|C|297
9QQP|1|m2|U|298
9QQP|1|m2|A|299
9QQP|1|m2|G|300

Current chains

Chain m2

18S ribosomal RNA

Nearby chains

Chain K3

Small ribosomal subunit protein eS6

Chain r2

40S ribosomal protein S4, X isoform (eS4)

Chain u2

Small ribosomal subunit protein eS8

Chain w2

Small ribosomal subunit protein uS17