IL_9QQP_227

3D structure

PDB id

9QQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome rotated-2 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

ACAGGAUUG*CUCGAUU

Length

16 nucleotides

Bulged bases

9QQP|1|m2|G|1287

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQP|1|m2|A|1284
9QQP|1|m2|C|1285
9QQP|1|m2|A|1286
9QQP|1|m2|G|1287
9QQP|1|m2|G|1288
9QQP|1|m2|A|1289
9QQP|1|m2|U|1290
9QQP|1|m2|U|1291
9QQP|1|m2|G|1292
*
9QQP|1|m2|C|1311
9QQP|1|m2|U|1312
9QQP|1|m2|C|1313
9QQP|1|m2|G|1314
9QQP|1|m2|A|1315
9QQP|1|m2|U|1316
9QQP|1|m2|U|1317

Current chains

Chain m2

18S ribosomal RNA

Nearby chains

Chain H3

Small ribosomal subunit protein uS14

Chain M3

Small ribosomal subunit protein eS12

Chain v2

Small ribosomal subunit protein eS10