IL_9QQQ_003

3D structure

PDB id

9QQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

CCUAAC*GGG

Length

9 nucleotides

Bulged bases

9QQQ|1|A|C|48, 9QQQ|1|A|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQQ_003 not in the Motif Atlas

Geometric match to IL_8B0X_003

Geometric discrepancy: 0.0536

The information below is about IL_8B0X_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

9QQQ|1|A|C|47
9QQQ|1|A|C|48
9QQQ|1|A|U|49
9QQQ|1|A|A|50
9QQQ|1|A|A|51
9QQQ|1|A|C|52
*
9QQQ|1|A|G|359
9QQQ|1|A|G|360
9QQQ|1|A|G|361

Current chains

Chain A

E. coli 16S rRNA

Nearby chains

Chain L

Small ribosomal subunit protein uS12