IL_9QQQ_010

3D structure

PDB id

9QQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

CUGCC*GAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQQ_010 not in the Motif Atlas

Homologous match to IL_6CZR_120

Geometric discrepancy: 0.1874

The information below is about IL_6CZR_120

Detailed Annotation

Minor groove platform related

Broad Annotation

Minor groove platform related

Motif group

IL_64231.4

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

12

Unit IDs

9QQQ|1|A|C|132
9QQQ|1|A|U|133
9QQQ|1|A|G|134
9QQQ|1|A|C|135
9QQQ|1|A|C|136
*
9QQQ|1|A|G|227
9QQQ|1|A|A|228
9QQQ|1|A|U|229
9QQQ|1|A|G|230

Current chains

Chain A

E. coli 16S rRNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain T

Small ribosomal subunit protein bS20