IL_9QQQ_022

3D structure

PDB id

9QQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQQ|1|A|G|450
9QQQ|1|A|A|451
9QQQ|1|A|A|452
9QQQ|1|A|G|453
9QQQ|1|A|G|454
9QQQ|1|A|G|455
*
9QQQ|1|A|C|477
9QQQ|1|A|A|478
9QQQ|1|A|U|479
9QQQ|1|A|U|480
9QQQ|1|A|G|481
9QQQ|1|A|A|482
9QQQ|1|A|C|483

Current chains

Chain A

E. coli 16S rRNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16