IL_9QQQ_055

3D structure

PDB id

9QQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQQ_055 not in the Motif Atlas

Homologous match to IL_6CZR_164

Geometric discrepancy: 0.1618

The information below is about IL_6CZR_164

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQQ|1|A|C|1303
9QQQ|1|A|G|1304
9QQQ|1|A|G|1305
9QQQ|1|A|A|1306
9QQQ|1|A|U|1307
9QQQ|1|A|U|1308
*
9QQQ|1|A|A|1329
9QQQ|1|A|U|1330
9QQQ|1|A|G|1331
9QQQ|1|A|A|1332
9QQQ|1|A|A|1333
9QQQ|1|A|G|1334

Current chains

Chain A

E. coli 16S rRNA

Nearby chains

Chain M

Small ribosomal subunit protein uS13