IL_9QQQ_059

3D structure

PDB id

9QQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

(5MC)AC*GAAG

Length

7 nucleotides

Bulged bases

9QQQ|1|A|A|1493

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQQ|1|A|5MC|1407
9QQQ|1|A|A|1408
9QQQ|1|A|C|1409
*
9QQQ|1|A|G|1491
9QQQ|1|A|A|1492
9QQQ|1|A|A|1493
9QQQ|1|A|G|1494

Current chains

Chain A

E. coli 16S rRNA

Nearby chains

Chain L

Small ribosomal subunit protein uS12

Chain X

ermBL mRNA transcript

Chain a

Large subunit ribosomal RNA; LSU rRNA