IL_9QQQ_064

3D structure

PDB id

9QQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

UAAC*GAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQQ_064 not in the Motif Atlas

Geometric match to IL_8B0X_064

Geometric discrepancy: 0.0737

The information below is about IL_8B0X_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05502.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

9QQQ|1|A|U|1445
9QQQ|1|A|A|1446
9QQQ|1|A|A|1447
9QQQ|1|A|C|1448
*
9QQQ|1|A|G|1455
9QQQ|1|A|A|1456
9QQQ|1|A|G|1457

Current chains

Chain A

E. coli 16S rRNA

Nearby chains

Chain T

Small ribosomal subunit protein bS20