IL_9QQQ_065

3D structure

PDB id

9QQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GAG*CUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQQ_065 not in the Motif Atlas

Geometric match to IL_8AF0_002

Geometric discrepancy: 0.1548

The information below is about IL_8AF0_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

61

Unit IDs

9QQQ|1|Z|G|10
9QQQ|1|Z|A|11
9QQQ|1|Z|G|12
*
9QQQ|1|Z|C|23
9QQQ|1|Z|U|24
9QQQ|1|Z|C|25

Current chains

Chain Z

P-site tRNA-fMet

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain a

Large subunit ribosomal RNA; LSU rRNA