IL_9QQQ_074

3D structure

PDB id

9QQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQQ_074 not in the Motif Atlas

Geometric match to IL_8B0X_073

Geometric discrepancy: 0.1663

The information below is about IL_8B0X_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22028.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

9QQQ|1|a|C|274
9QQQ|1|a|C|275
9QQQ|1|a|U|276
9QQQ|1|a|G|277
9QQQ|1|a|A|278
9QQQ|1|a|A|279
9QQQ|1|a|U|280
9QQQ|1|a|C|281
*
9QQQ|1|a|G|359
9QQQ|1|a|U|360
9QQQ|1|a|G|361
9QQQ|1|a|A|362
9QQQ|1|a|G|363

Current chains

Chain a

E. coli 23S rRNA

Nearby chains