IL_9QQQ_114

3D structure

PDB id

9QQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

9QQQ|1|a|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQQ_114 not in the Motif Atlas

Homologous match to IL_7A0S_051

Geometric discrepancy: 0.4979

The information below is about IL_7A0S_051

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

25

Unit IDs

9QQQ|1|a|C|1417
9QQQ|1|a|G|1418
9QQQ|1|a|A|1419
9QQQ|1|a|A|1420
9QQQ|1|a|G|1421
*
9QQQ|1|a|C|1577
9QQQ|1|a|U|1578
9QQQ|1|a|A|1579
9QQQ|1|a|A|1580
9QQQ|1|a|G|1581

Current chains

Chain a

E. coli 23S rRNA

Nearby chains