IL_9QQQ_119

3D structure

PDB id

9QQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQQ_119 not in the Motif Atlas

Homologous match to IL_7A0S_056

Geometric discrepancy: 0.5378

The information below is about IL_7A0S_056

Detailed Annotation

Double sheared with near cWW

Broad Annotation

Double sheared

Motif group

IL_87767.3

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9QQQ|1|a|U|1474
9QQQ|1|a|G|1475
9QQQ|1|a|U|1476
9QQQ|1|a|A|1477
9QQQ|1|a|G|1478
*
9QQQ|1|a|U|1513
9QQQ|1|a|G|1514
9QQQ|1|a|A|1515
9QQQ|1|a|G|1516
9QQQ|1|a|G|1517

Current chains

Chain a

E. coli 23S rRNA

Nearby chains