IL_9QQQ_127

3D structure

PDB id

9QQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

ACUAGG*CUGU

Length

10 nucleotides

Bulged bases

9QQQ|1|a|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQQ_127 not in the Motif Atlas

Homologous match to IL_7A0S_062

Geometric discrepancy: 0.1047

The information below is about IL_7A0S_062

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_28217.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

11

Unit IDs

9QQQ|1|a|A|1669
9QQQ|1|a|C|1670
9QQQ|1|a|U|1671
9QQQ|1|a|A|1672
9QQQ|1|a|G|1673
9QQQ|1|a|G|1674
*
9QQQ|1|a|C|1990
9QQQ|1|a|U|1991
9QQQ|1|a|G|1992
9QQQ|1|a|U|1993

Current chains

Chain a

E. coli 23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain j

Large ribosomal subunit protein uL14