IL_9QQQ_138

3D structure

PDB id

9QQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GC*GCAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQQ_138 not in the Motif Atlas

Geometric match to IL_8B0X_137

Geometric discrepancy: 0.0505

The information below is about IL_8B0X_137

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24886.3

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

13

Unit IDs

9QQQ|1|a|G|1933
9QQQ|1|a|C|1934
*
9QQQ|1|a|G|1964
9QQQ|1|a|C|1965
9QQQ|1|a|A|1966
9QQQ|1|a|C|1967

Current chains

Chain a

E. coli 23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain Z

Transfer RNA; tRNA