IL_9QQQ_156

3D structure

PDB id

9QQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

9QQQ|1|a|G|2576, 9QQQ|1|a|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QQQ_156 not in the Motif Atlas

Homologous match to IL_7A0S_089

Geometric discrepancy: 0.1271

The information below is about IL_7A0S_089

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

9QQQ|1|a|C|2510
9QQQ|1|a|U|2511
9QQQ|1|a|C|2512
*
9QQQ|1|a|G|2574
9QQQ|1|a|C|2575
9QQQ|1|a|G|2576
9QQQ|1|a|A|2577
9QQQ|1|a|G|2578

Current chains

Chain a

E. coli 23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain z

Large ribosomal subunit protein bL32