IL_9QQQ_162
3D structure
- PDB id
- 9QQQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- UCACU*AAA
- Length
- 8 nucleotides
- Bulged bases
- 9QQQ|1|a|A|2726
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9QQQ_162 not in the Motif Atlas
- Homologous match to IL_7A0S_095
- Geometric discrepancy: 0.1511
- The information below is about IL_7A0S_095
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.13
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 23
Unit IDs
9QQQ|1|a|U|2680
9QQQ|1|a|C|2681
9QQQ|1|a|A|2682
9QQQ|1|a|C|2683
9QQQ|1|a|U|2684
*
9QQQ|1|a|A|2725
9QQQ|1|a|A|2726
9QQQ|1|a|A|2727
Current chains
- Chain a
- E. coli 23S rRNA
Nearby chains
- Chain d
- Large ribosomal subunit protein uL3
- Chain j
- Large ribosomal subunit protein uL14
- Chain m
- Large ribosomal subunit protein bL17
- Chain o
- Large ribosomal subunit protein bL19
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