IL_9QQQ_168
3D structure
- PDB id
- 9QQQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- GGUG*CUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9QQQ_168 not in the Motif Atlas
- Geometric match to IL_8B0X_169
- Geometric discrepancy: 0.0428
- The information below is about IL_8B0X_169
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60988.3
- Basepair signature
- cWW-cWW-L-R-L-cWW
- Number of instances in this motif group
- 9
Unit IDs
9QQQ|1|a|G|2843
9QQQ|1|a|G|2844
9QQQ|1|a|U|2845
9QQQ|1|a|G|2846
*
9QQQ|1|a|C|2870
9QQQ|1|a|U|2871
9QQQ|1|a|A|2872
9QQQ|1|a|A|2873
9QQQ|1|a|C|2874
Current chains
- Chain a
- E. coli 23S rRNA
Nearby chains
- Chain m
- Large ribosomal subunit protein bL17
- Chain o
- Large ribosomal subunit protein bL19
Coloring options: