IL_9QSJ_011

3D structure

PDB id

9QSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GGG*CGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QSJ_011 not in the Motif Atlas

Geometric match to IL_8B0X_011

Geometric discrepancy: 0.0604

The information below is about IL_8B0X_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

9QSJ|1|A|G|144
9QSJ|1|A|G|145
9QSJ|1|A|G|146
*
9QSJ|1|A|C|176
9QSJ|1|A|G|177
9QSJ|1|A|C|178

Current chains

Chain A

E. coli 16S rRNA

Nearby chains

Chain T

Small ribosomal subunit protein bS20