IL_9QSJ_039

3D structure

PDB id

9QSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GGG*UU

Length

5 nucleotides

Bulged bases

9QSJ|1|A|G|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QSJ_039 not in the Motif Atlas

Homologous match to IL_6CZR_148

Geometric discrepancy: 0.1627

The information below is about IL_6CZR_148

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.12

Basepair signature

cWW-L-cWW

Number of instances in this motif group

52

Unit IDs

9QSJ|1|A|G|925
9QSJ|1|A|G|926
9QSJ|1|A|G|927
*
9QSJ|1|A|U|1390
9QSJ|1|A|U|1391

Current chains

Chain A

E. coli 16S rRNA

Nearby chains

Chain X

ermBL mRNA transcript