IL_9QSJ_042

3D structure

PDB id

9QSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GACAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QSJ_042 not in the Motif Atlas

Geometric match to IL_8B0X_042

Geometric discrepancy: 0.1004

The information below is about IL_8B0X_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49794.1

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

2

Unit IDs

9QSJ|1|A|G|993
9QSJ|1|A|A|994
9QSJ|1|A|C|995
9QSJ|1|A|A|996
9QSJ|1|A|U|997
*
9QSJ|1|A|A|1044
9QSJ|1|A|C|1045

Current chains

Chain A

E. coli 16S rRNA

Nearby chains

Chain C

Small ribosomal subunit protein uS3

Chain N

Small ribosomal subunit protein uS14