IL_9QSJ_055

3D structure

PDB id

9QSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QSJ_055 not in the Motif Atlas

Homologous match to IL_6CZR_164

Geometric discrepancy: 0.164

The information below is about IL_6CZR_164

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QSJ|1|A|C|1303
9QSJ|1|A|G|1304
9QSJ|1|A|G|1305
9QSJ|1|A|A|1306
9QSJ|1|A|U|1307
9QSJ|1|A|U|1308
*
9QSJ|1|A|A|1329
9QSJ|1|A|U|1330
9QSJ|1|A|G|1331
9QSJ|1|A|A|1332
9QSJ|1|A|A|1333
9QSJ|1|A|G|1334

Current chains

Chain A

E. coli 16S rRNA

Nearby chains

Chain M

Small ribosomal subunit protein uS13