IL_9QSJ_073

3D structure

PDB id

9QSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QSJ_073 not in the Motif Atlas

Geometric match to IL_8B0X_073

Geometric discrepancy: 0.1765

The information below is about IL_8B0X_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22028.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

9QSJ|1|a|C|274
9QSJ|1|a|C|275
9QSJ|1|a|U|276
9QSJ|1|a|G|277
9QSJ|1|a|A|278
9QSJ|1|a|A|279
9QSJ|1|a|U|280
9QSJ|1|a|C|281
*
9QSJ|1|a|G|359
9QSJ|1|a|U|360
9QSJ|1|a|G|361
9QSJ|1|a|A|362
9QSJ|1|a|G|363

Current chains

Chain a

E. coli 23S rRNA

Nearby chains