IL_9QSJ_102
3D structure
- PDB id
- 9QSJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- GAUG*CGC
- Length
- 7 nucleotides
- Bulged bases
- 9QSJ|1|a|U|1033
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9QSJ_102 not in the Motif Atlas
- Homologous match to IL_7A0S_038
- Geometric discrepancy: 0.2527
- The information below is about IL_7A0S_038
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_76400.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 11
Unit IDs
9QSJ|1|a|G|1031
9QSJ|1|a|A|1032
9QSJ|1|a|U|1033
9QSJ|1|a|G|1034
*
9QSJ|1|a|C|1121
9QSJ|1|a|G|1122
9QSJ|1|a|C|1123
Current chains
- Chain a
- E. coli 23S rRNA
Nearby chains
- Chain 3
- Large ribosomal subunit protein bL36A
- Chain b
- 5S ribosomal RNA; 5S rRNA
- Chain l
- Large ribosomal subunit protein uL16
Coloring options: