IL_9QSJ_118

3D structure

PDB id

9QSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QSJ_118 not in the Motif Atlas

Homologous match to IL_7A0S_056

Geometric discrepancy: 0.5377

The information below is about IL_7A0S_056

Detailed Annotation

Double sheared with near cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9QSJ|1|a|U|1474
9QSJ|1|a|G|1475
9QSJ|1|a|U|1476
9QSJ|1|a|A|1477
9QSJ|1|a|G|1478
*
9QSJ|1|a|U|1513
9QSJ|1|a|G|1514
9QSJ|1|a|A|1515
9QSJ|1|a|G|1516
9QSJ|1|a|G|1517

Current chains

Chain a

E. coli 23S rRNA

Nearby chains