IL_9QSJ_152
3D structure
- PDB id
- 9QSJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- AUA*UGUUU
- Length
- 8 nucleotides
- Bulged bases
- 9QSJ|1|a|U|2491
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9QSJ_152 not in the Motif Atlas
- Homologous match to IL_7A0S_086
- Geometric discrepancy: 0.1777
- The information below is about IL_7A0S_086
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform with extra cWW
- Motif group
- IL_36931.3
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 26
Unit IDs
9QSJ|1|a|A|2459
9QSJ|1|a|U|2460
9QSJ|1|a|A|2461
*
9QSJ|1|a|U|2489
9QSJ|1|a|G|2490
9QSJ|1|a|U|2491
9QSJ|1|a|U|2492
9QSJ|1|a|U|2493
Current chains
- Chain a
- E. coli 23S rRNA
Nearby chains
- Chain Y
- Transfer RNA; tRNA
- Chain d
- Large ribosomal subunit protein uL3
- Chain l
- Large ribosomal subunit protein uL16
- Chain v
- Large ribosomal subunit protein bL27
Coloring options: