IL_9QSJ_166

3D structure

PDB id

9QSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GG*UAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QSJ_166 not in the Motif Atlas

Homologous match to IL_7A0S_099

Geometric discrepancy: 0.1684

The information below is about IL_7A0S_099

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

9QSJ|1|a|G|2838
9QSJ|1|a|G|2839
*
9QSJ|1|a|U|2878
9QSJ|1|a|A|2879
9QSJ|1|a|C|2880

Current chains

Chain a

E. coli 23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain m

Large ribosomal subunit protein bL17