IL_9QWT_114

3D structure

PDB id

9QWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome RPS15 (uS19) P131S rotated-2 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGAGGC*GCUC

Length

11 nucleotides

Bulged bases

9QWT|1|A2|G|3734, 9QWT|1|A2|G|3736, 9QWT|1|A2|G|3737, 9QWT|1|A2|C|3814, 9QWT|1|A2|U|3815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QWT|1|A2|G|3732
9QWT|1|A2|U|3733
9QWT|1|A2|G|3734
9QWT|1|A2|A|3735
9QWT|1|A2|G|3736
9QWT|1|A2|G|3737
9QWT|1|A2|C|3738
*
9QWT|1|A2|G|3813
9QWT|1|A2|C|3814
9QWT|1|A2|U|3815
9QWT|1|A2|C|3816

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain B1

Large ribosomal subunit protein eL8

Chain C2

5.8S ribosomal RNA; 5.8S rRNA

Chain D2

Large ribosomal subunit protein uL2

Chain R2

Large ribosomal subunit protein uL23