IL_9QWT_158

3D structure

PDB id

9QWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome RPS15 (uS19) P131S rotated-2 PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CA*UCG

Length

5 nucleotides

Bulged bases

9QWT|1|B2|C|63

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9QWT_158 not in the Motif Atlas

Geometric match to IL_8QYX_165

Geometric discrepancy: 0.0641

The information below is about IL_8QYX_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05642.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

9QWT|1|B2|C|15
9QWT|1|B2|A|16
*
9QWT|1|B2|U|62
9QWT|1|B2|C|63
9QWT|1|B2|G|64

Current chains

Chain B2

5S ribosomal RNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain D1

Large ribosomal subunit protein uL16

Chain E1

Large ribosomal subunit protein uL5

Chain G2

Large ribosomal subunit protein uL18