3D structure

PDB id
9QZP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mouse Ribosome Classical Pre translocation state
Experimental method
ELECTRON MICROSCOPY
Resolution
3.43 Å

Loop

Sequence
UGGAAUG*CGAGAGA
Length
14 nucleotides
Bulged bases
9QZP|1|A2|U|2416, 9QZP|1|A2|A|2429
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9QZP|1|A2|U|2411
9QZP|1|A2|G|2412
9QZP|1|A2|G|2413
9QZP|1|A2|A|2414
9QZP|1|A2|A|2415
9QZP|1|A2|U|2416
9QZP|1|A2|G|2417
*
9QZP|1|A2|C|2427
9QZP|1|A2|G|2428
9QZP|1|A2|A|2429
9QZP|1|A2|G|2430
9QZP|1|A2|A|2431
9QZP|1|A2|G|2432
9QZP|1|A2|A|2433

Current chains

Chain A2
28S ribosomal RNA

Nearby chains

Chain L2
Large ribosomal subunit protein eL19
Chain N3
Small ribosomal subunit protein uS15
Chain T2
Large ribosomal subunit protein eL27
Chain W2
Large ribosomal subunit protein eL30
Chain a2
Large ribosomal subunit protein eL34
Chain j2
Large ribosomal subunit protein eL43

Coloring options:

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