IL_9QZP_162

3D structure

PDB id

9QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse Ribosome Classical Pre translocation state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

CCCCGGAUAG*UGCGGAGAG

Length

19 nucleotides

Bulged bases

9QZP|1|A2|C|4409, 9QZP|1|A2|C|4410, 9QZP|1|A2|A|4416, 9QZP|1|A2|G|4515, 9QZP|1|A2|C|4516, 9QZP|1|A2|G|4518, 9QZP|1|A2|A|4521

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QZP|1|A2|C|4408
9QZP|1|A2|C|4409
9QZP|1|A2|C|4410
9QZP|1|A2|C|4411
9QZP|1|A2|G|4412
9QZP|1|A2|G|4413
9QZP|1|A2|A|4414
9QZP|1|A2|U|4415
9QZP|1|A2|A|4416
9QZP|1|A2|G|4417
*
9QZP|1|A2|U|4514
9QZP|1|A2|G|4515
9QZP|1|A2|C|4516
9QZP|1|A2|G|4517
9QZP|1|A2|G|4518
9QZP|1|A2|A|4519
9QZP|1|A2|G|4520
9QZP|1|A2|A|4521
9QZP|1|A2|G|4522

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain C1

Large ribosomal subunit protein uL6

Chain G1

Large ribosomal subunit protein eL14

Chain H2

Large ribosomal subunit protein eL6

Chain I2

Large ribosomal subunit protein uL13

Chain M2

Large ribosomal subunit protein eL20