3D structure

PDB id
9QZP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mouse Ribosome Classical Pre translocation state
Experimental method
ELECTRON MICROSCOPY
Resolution
3.43 Å

Loop

Sequence
GACAGGAUUG*CUCGAUUC
Length
18 nucleotides
Bulged bases
9QZP|1|m2|G|1287
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9QZP|1|m2|G|1283
9QZP|1|m2|A|1284
9QZP|1|m2|C|1285
9QZP|1|m2|A|1286
9QZP|1|m2|G|1287
9QZP|1|m2|G|1288
9QZP|1|m2|A|1289
9QZP|1|m2|U|1290
9QZP|1|m2|U|1291
9QZP|1|m2|G|1292
*
9QZP|1|m2|C|1311
9QZP|1|m2|U|1312
9QZP|1|m2|C|1313
9QZP|1|m2|G|1314
9QZP|1|m2|A|1315
9QZP|1|m2|U|1316
9QZP|1|m2|U|1317
9QZP|1|m2|C|1318

Current chains

Chain m2
18S ribosomal RNA

Nearby chains

Chain H3
Small ribosomal subunit protein uS14
Chain M3
Small ribosomal subunit protein eS12
Chain U3
Ubiquitin-ribosomal protein eS31 fusion protein
Chain v2
Small ribosomal subunit protein eS10

Coloring options:

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