IL_9R9P_029

3D structure

PDB id

9R9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9R9P_029 not in the Motif Atlas

Homologous match to IL_9PN5_030

Geometric discrepancy: 0.0637

The information below is about IL_9PN5_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15190.5

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

29

Unit IDs

9R9P|1|C1|U|834
9R9P|1|C1|G|835
9R9P|1|C1|A|836
9R9P|1|C1|A|837
9R9P|1|C1|G|838
*
9R9P|1|C1|U|855
9R9P|1|C1|G|856
9R9P|1|C1|G|857
9R9P|1|C1|A|858
9R9P|1|C1|G|859

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L2-A

Chain LR

60S ribosomal protein L19-A

Chain Lp

60S ribosomal protein L43-A