IL_9R9P_039
3D structure
- PDB id
- 9R9P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GCGAAU*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 9R9P|1|C1|G|1001
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9R9P_039 not in the Motif Atlas
- Homologous match to IL_9PN5_039
- Geometric discrepancy: 0.101
- The information below is about IL_9PN5_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_16301.4
- Basepair signature
- cWW-cWS-tWH-R-L-R-cWW
- Number of instances in this motif group
- 11
Unit IDs
9R9P|1|C1|G|999
9R9P|1|C1|C|1000
9R9P|1|C1|G|1001
9R9P|1|C1|A|1002
9R9P|1|C1|A|1003
9R9P|1|C1|U|1004
*
9R9P|1|C1|A|1046
9R9P|1|C1|A|1047
9R9P|1|C1|A|1048
9R9P|1|C1|C|1049
Current chains
- Chain C1
- 25S ribosomal RNA
Nearby chains
- Chain C4
- 5S ribosomal RNA; 5S rRNA
- Chain LD
- 60S ribosomal protein L5
- Chain LI
- 60S ribosomal protein L10
- Chain LT
- 60S ribosomal protein L21-A
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