IL_9R9P_052

3D structure

PDB id

9R9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UCUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

9R9P|1|C1|A|1221

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9R9P_052 not in the Motif Atlas

Homologous match to IL_8GLP_082

Geometric discrepancy: 0.3342

The information below is about IL_8GLP_082

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.4

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

5

Unit IDs

9R9P|1|C1|U|1218
9R9P|1|C1|C|1219
9R9P|1|C1|U|1220
9R9P|1|C1|A|1221
9R9P|1|C1|G|1222
9R9P|1|C1|A|1223
9R9P|1|C1|C|1224
9R9P|1|C1|A|1225
9R9P|1|C1|G|1226
*
9R9P|1|C1|C|1283
9R9P|1|C1|C|1284
9R9P|1|C1|G|1285
9R9P|1|C1|A|1286
9R9P|1|C1|A|1287

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain LS

60S ribosomal protein L20-A