IL_9R9P_117

3D structure

PDB id

9R9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAACG*UUG

Length

8 nucleotides

Bulged bases

9R9P|1|C1|U|3259

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9R9P_117 not in the Motif Atlas

Homologous match to IL_9PN5_122

Geometric discrepancy: 0.1612

The information below is about IL_9PN5_122

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62925.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

4

Unit IDs

9R9P|1|C1|C|3225
9R9P|1|C1|A|3226
9R9P|1|C1|A|3227
9R9P|1|C1|C|3228
9R9P|1|C1|G|3229
*
9R9P|1|C1|U|3258
9R9P|1|C1|U|3259
9R9P|1|C1|G|3260

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain LE

60S ribosomal protein L6-B

Chain LM

60S ribosomal protein L14-A

Chain LO

60S ribosomal protein L16-A