IL_9R9P_158

3D structure

PDB id

9R9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

9R9P|1|C2|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9R9P_158 not in the Motif Atlas

Homologous match to IL_9PN5_172

Geometric discrepancy: 0.254

The information below is about IL_9PN5_172

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.8

Basepair signature

cWW-L-cWW

Number of instances in this motif group

192

Unit IDs

9R9P|1|C2|G|557
9R9P|1|C2|U|558
9R9P|1|C2|C|559
*
9R9P|1|C2|G|586
9R9P|1|C2|C|587

Current chains

Chain C2

RNA (1642-MER)

Nearby chains

Chain SD

Small ribosomal subunit protein uS3

Chain SX

40S ribosomal protein S23-A

Chain Se

40S ribosomal protein S30-A