IL_9R9P_178

3D structure

PDB id

9R9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

9R9P|1|C2|U|1052

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9R9P_178 not in the Motif Atlas

Homologous match to IL_9PN5_193

Geometric discrepancy: 0.4556

The information below is about IL_9PN5_193

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.8

Basepair signature

cWW-L-cWW

Number of instances in this motif group

192

Unit IDs

9R9P|1|C2|G|1051
9R9P|1|C2|U|1052
9R9P|1|C2|G|1053
*
9R9P|1|C2|C|1066
9R9P|1|C2|C|1067

Current chains

Chain C2

RNA (1642-MER)

Nearby chains

Chain SB

40S ribosomal protein S1-A

Chain SR

40S ribosomal protein S17-B

Chain Sb

40S ribosomal protein S27-A