IL_9R9P_182

3D structure

PDB id

9R9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

9R9P|1|C2|C|1158, 9R9P|1|C2|C|1159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9R9P|1|C2|A|1157
9R9P|1|C2|C|1158
9R9P|1|C2|C|1159
9R9P|1|C2|A|1160
*
9R9P|1|C2|U|1617
9R9P|1|C2|C|1618
9R9P|1|C2|C|1619
9R9P|1|C2|C|1620
9R9P|1|C2|U|1621

Current chains

Chain C2

RNA (1642-MER)

Nearby chains

Chain 5

mRNA_Flag-Pgk-1-70

Chain 6

Transfer RNA; tRNA

Chain SF

40S ribosomal protein S5

Chain SQ

40S ribosomal protein S16-A

Chain Sc

Small ribosomal subunit protein eS28B