IL_9R9P_218

3D structure

PDB id

9R9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S2 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGGAU*AGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9R9P_218 not in the Motif Atlas

Homologous match to IL_9PN5_231

Geometric discrepancy: 0.1624

The information below is about IL_9PN5_231

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15190.5

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

29

Unit IDs

9R9P|1|C2|A|1678
9R9P|1|C2|G|1679
9R9P|1|C2|G|1680
9R9P|1|C2|A|1681
9R9P|1|C2|U|1682
*
9R9P|1|C2|A|1719
9R9P|1|C2|G|1720
9R9P|1|C2|A|1721
9R9P|1|C2|A|1722
9R9P|1|C2|U|1723

Current chains

Chain C2

RNA (1642-MER)

Nearby chains

Chain LW

Large ribosomal subunit protein eL24B

Chain SG

40S ribosomal protein S6-A

Chain SI

40S ribosomal protein S8-A