IL_9RBF_021

3D structure

PDB id

9RBF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a stalled E. coli 70S RNC-NuoK-86 in complex with the membrane protein insertase SecYEG-YidC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

9RBF|1|A|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RBF_021 not in the Motif Atlas

Geometric match to IL_8B0X_021

Geometric discrepancy: 0.1112

The information below is about IL_8B0X_021

Detailed Annotation

tWW-tWH-tHS

Broad Annotation

tWW-tWH-tHS

Motif group

IL_82100.1

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9RBF|1|A|G|446
9RBF|1|A|G|447
9RBF|1|A|A|448
9RBF|1|A|G|449
9RBF|1|A|G|450
*
9RBF|1|A|C|483
9RBF|1|A|G|484
9RBF|1|A|U|485
9RBF|1|A|U|486
9RBF|1|A|A|487
9RBF|1|A|C|488

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4

Chain P

Small ribosomal subunit protein bS16