IL_9RBF_072

3D structure

PDB id

9RBF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a stalled E. coli 70S RNC-NuoK-86 in complex with the membrane protein insertase SecYEG-YidC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RBF_072 not in the Motif Atlas

Geometric match to IL_8B0X_071

Geometric discrepancy: 0.0551

The information below is about IL_8B0X_071

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9RBF|1|a|C|239
9RBF|1|a|C|240
9RBF|1|a|A|241
9RBF|1|a|G|242
9RBF|1|a|U|243
9RBF|1|a|A|244
9RBF|1|a|G|245
*
9RBF|1|a|C|253
9RBF|1|a|G|254
9RBF|1|a|A|255
9RBF|1|a|A|256
9RBF|1|a|C|257
9RBF|1|a|G|258

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL35

Chain k

Large ribosomal subunit protein uL15