IL_9RBF_094

3D structure

PDB id

9RBF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a stalled E. coli 70S RNC-NuoK-86 in complex with the membrane protein insertase SecYEG-YidC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

UUU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RBF_094 not in the Motif Atlas

Homologous match to IL_7A0S_030

Geometric discrepancy: 0.3463

The information below is about IL_7A0S_030

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_84227.1

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

20

Unit IDs

9RBF|1|a|U|870
9RBF|1|a|U|871
9RBF|1|a|U|872
*
9RBF|1|a|A|905
9RBF|1|a|U|906
9RBF|1|a|G|907

Current chains

Chain a

23S rRNA

Nearby chains

Chain l

50S ribosomal protein L16