IL_9RBF_152

3D structure

PDB id

9RBF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a stalled E. coli 70S RNC-NuoK-86 in complex with the membrane protein insertase SecYEG-YidC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

AG*(OMC)CU

Length

5 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RBF_152 not in the Motif Atlas

Homologous match to IL_7A0S_083

Geometric discrepancy: 0.2308

The information below is about IL_7A0S_083

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

9RBF|1|a|A|2453
9RBF|1|a|G|2454
*
9RBF|1|a|OMC|2498
9RBF|1|a|C|2499
9RBF|1|a|U|2500

Current chains

Chain a

23S rRNA

Nearby chains

Chain V

NuoK-86 nascent peptide

Chain Y

Transfer RNA; tRNA

Chain d

Large ribosomal subunit protein uL3