IL_9RBF_160

3D structure

PDB id

9RBF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a stalled E. coli 70S RNC-NuoK-86 in complex with the membrane protein insertase SecYEG-YidC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

9RBF|1|a|A|2542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RBF_160 not in the Motif Atlas

Homologous match to IL_7A0S_091

Geometric discrepancy: 0.0908

The information below is about IL_7A0S_091

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_94991.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

17

Unit IDs

9RBF|1|a|U|2522
9RBF|1|a|G|2523
*
9RBF|1|a|C|2540
9RBF|1|a|A|2541
9RBF|1|a|A|2542
9RBF|1|a|G|2543

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL36A

Chain i

Large ribosomal subunit protein uL13