IL_9RFW_074

3D structure

PDB id

9RFW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Manikomycin bound to the Escherichia coli 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UUAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RFW_074 not in the Motif Atlas

Geometric match to IL_8B0X_136

Geometric discrepancy: 0.0471

The information below is about IL_8B0X_136

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77691.7

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

9RFW|1|a|U|1864
9RFW|1|a|U|1865
9RFW|1|a|A|1866
9RFW|1|a|G|1867
*
9RFW|1|a|C|1874
9RFW|1|a|G|1875
9RFW|1|a|A|1876
9RFW|1|a|A|1877
9RFW|1|a|G|1878

Current chains

Chain a

23S rRNA

Nearby chains