IL_9RFW_078

3D structure

PDB id

9RFW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Manikomycin bound to the Escherichia coli 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

9RFW|1|a|C|2055, 9RFW|1|a|U|2613, 9RFW|1|a|A|2614

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9RFW_078 not in the Motif Atlas

Geometric match to IL_8B0X_140

Geometric discrepancy: 0.0479

The information below is about IL_8B0X_140

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80025.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

9

Unit IDs

9RFW|1|a|A|2054
9RFW|1|a|C|2055
9RFW|1|a|G|2056
*
9RFW|1|a|C|2612
9RFW|1|a|U|2613
9RFW|1|a|A|2614
9RFW|1|a|U|2615

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain r

Large ribosomal subunit protein uL22

Chain z

Large ribosomal subunit protein bL32